Ensembl S.cerevisiae

 

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About the S. cerevisiae genome

Assembly and Annotation

Saccharomyces cerevisiaeThe data on this site is a direct import of the Saccharomyces Genome Database dataset for the Saccharomyces cerevisiae S288C genome. No additional genebuild was carried out, but a series of blast runs was done to provide ESTs, Swall hits, and other similarity data.

We have included S.cerevisiae into the Ensembl system to allow people to access the data through the Ensembl user interface (both for visualisation and data mining) and to provide cross-species integration through our comparative genomics resources (such as homologous gene links and protein family/domain pages).

The canonical data for S.cerevisiae is managed at SGD.

Image courtesy American Society for Microbiology

What's New in Ensembl 41

Saccharomyces cerevisiae News

There is no Saccharomyces cerevisiae-specific news this release.

General News

  • New animated tutorials
    A selection of Ensembl tutorials are now available online as Flash-animated presentations (with popup notes instead of a soundtrack).
    Read more...
  • Compara updates
    Homologies
    Gene trees have been updated to include the 2X genomes and use a multifurcating species tree, and homologues added based on gene trees.
    Read more...
  • Minor schema changes
    analysis_description
    Now has a 'displayable' flag to control whether or not it is usually displayed in the web pages
    xref
    One column has been changed and one added
    • the info_type column has addition ENUM values to give more details about xref provenance
    • A new column 'priority' supports the fetching of xrefs of the same type

    The API has of course been updated to reflect these changes

    .
    Read more...

More news...

Statistics

Assembly: SGD 1, Nov 2005
Genebuild: SGD, Nov 2005
Database version: 41.1d
Known genes: 6,680
Pseudogenes: 21
RNA genes: 397
Genscan gene predictions: 5,077
Genefinder gene predictions: 3,311
Gene exons: 7,026
Gene transcripts: 6,680
Base Pairs*: 12,156,590
Golden Path Length**: 12,156,590
Most common InterPro domains: Top 40 Top 500

* Total number of base pairs = sum of lengths of DNA table

** Reference assembly (Golden path) length = sum of non-redundant top level seq regions


 

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Ensembl release 41 - Oct 2006
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