Ensembl Dog

 

Explore the Canis familiaris genome

Karyotype

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chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome 19 chromosome 20 chromosome 21 chromosome 22 chromosome 23 chromosome 24 chromosome 25 chromosome 26 chromosome 27 chromosome 28 chromosome 29 chromosome 30 chromosome 31 chromosome 32 chromosome 33 chromosome 34 chromosome 35 chromosome 36 chromosome 37 chromosome 38 chromosome X chromosome MT Dog karyotype selector

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About the Dog genome

Assembly

Tasha the boxer This site provides the first gene annotation set based on the initial release [July 2004] from the Dog Genome Sequencing consortium.

The assembly is constructed from a WGS read coverage of 7.6x (Q20 bases, assuming a genome of 2.4 Gb). It has an N50 contig length of 123 kb, N50 supercontig length of 41.6 Mb.

Annotation

The gene build was run via a reasonably standard Ensembl mammalian pipeline, modifed to make optimal choices of source proteins for each gene. This initial analysis gives 20,604 genes with 32,559 transcripts, but lacks a number (around 700) of orthologs to human which seem placeable on the dog genome. We are investigating these in more detail and may release a patched dataset in the future.

What's New in Ensembl 41

Canis familiaris News

  • RNA updates

    Ensembl RNA data has been updated as follows:

    • New ncRNAs for Zebrafish, Chimp, Medaka, Elephant, Rabbit, Armadillo and Tenrec
    • Updated miRNAs for all chordates.

General News

  • New animated tutorials
    A selection of Ensembl tutorials are now available online as Flash-animated presentations (with popup notes instead of a soundtrack).
    Read more...
  • Compara updates
    Homologies
    Gene trees have been updated to include the 2X genomes and use a multifurcating species tree, and homologues added based on gene trees.
    Read more...
  • Minor schema changes
    analysis_description
    Now has a 'displayable' flag to control whether or not it is usually displayed in the web pages
    xref
    One column has been changed and one added
    • the info_type column has addition ENUM values to give more details about xref provenance
    • A new column 'priority' supports the fetching of xrefs of the same type

    The API has of course been updated to reflect these changes

    .
    Read more...

More news...

Statistics

Assembly: CanFam 1.0, July 2004
Genebuild: Ensembl, Nov 2004
Database version: 41.1j
Known genes: 3,325
Projected genes: 13,786
Novel genes: 1,103
Pseudogenes: 2,238
RNA genes: 2,348
Genscan gene predictions: 77,477
Gene exons: 224,068
Gene transcripts: 32,559
Base Pairs*: 2,359,845,093
Golden Path Length**: 2,519,795,863
Most common InterPro domains: Top 40 Top 500

* Total number of base pairs = sum of lengths of DNA table

** Reference assembly (Golden path) length = sum of non-redundant top level seq regions

 

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Ensembl release 41 - Oct 2006
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